Retraining must be explicitly allowed in the script; you can see an example in Workshop 5. The retrain period is normally identical to the WFO test period. The trading Zorro instance automatically reloads the parameter and factor files whenever they are edited or retrained.
For the multiple instances issue of the FXCM order2go interface, the account number does not matter. We have indeed 10 laptops here nailed to a board for running several different systems simultaneously. However, the multiple instances problem is apparently related with the FXCM relogin function. When you set g->nWeekend to 2 so that Zorro logs off every weekend, it seems that multiple instances can run on the same PC.